PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G04290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 273aa    MW: 29540.8 Da    PI: 6.6917
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G04290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-1177133155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  OBART08G04290.1  77 SRYHGVTRLKWSGKFEAHLWDnSSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133
                      79*******************55558777778888.999999**************98 PP

2AP250.16.7e-16178232156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g+
  OBART08G04290.1 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 232
                      67*****999.9******99953323..36**********99*************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-877133IPR001471AP2/ERF domain
CDDcd000183.49E-1177145No hitNo description
SuperFamilySSF541712.09E-1177144IPR016177DNA-binding domain
PROSITE profilePS5103215.79178143IPR001471AP2/ERF domain
SMARTSM003801.6E-1378149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1078144IPR001471AP2/ERF domain
PfamPF008471.3E-11178231IPR001471AP2/ERF domain
CDDcd000184.40E-20178241No hitNo description
SuperFamilySSF541712.29E-17178241IPR016177DNA-binding domain
SMARTSM003803.8E-25179245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-19179239IPR001471AP2/ERF domain
PROSITE profilePS5103218.518179239IPR001471AP2/ERF domain
PRINTSPR003674.0E-8180191IPR001471AP2/ERF domain
PRINTSPR003674.0E-8221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG  60
GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNSS QVEGRKRKGK HGSYVTEENA  120
ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY  180
RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GAHAVTNFDI  240
SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650903.11e-155PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-65AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP73e-65PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0D3GWT00.0A0A0D3GWT0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I7N40.0A0A0E0I7N4_ORYNI; Uncharacterized protein
TrEMBLA2YRN80.0A2YRN8_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA027579-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-66AP2 family protein